Structural Biology

SWISS-MODEL Repository

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Protein structure homology models

ModelArchive

Repository of predicted macromolecular structure models

SwissDock

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Docking of small ligands into protein active sites

System Biology

MetaNetX

Metabolic network repository & analysis

Cellosaurus

Knowledge resource on cell lines

Genes & Genomes

Gene expression expertise

Evolution & Phylogeny

Orthology inference among complete genomes

OrthoDB

Ortholog evolutionary and functional annotations

Selectome

Database of positive selection

Proteins & Proteomes

PROSITE

Protein family and domain database

STRING

Protein-protein interaction networks and enrichment analysis

UniProtKB

Protein sequence database

ViralZone

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Fact sheets about viruses linked to sequence databases

ENZYME

Enzyme nomenclature database

HAMAP

UniProtKB family classification and annotation

SwissLipids

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Knowledge resource for lipids

VenomZone

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Portal to venom protein UniProtKB entries

Protein Universe Atlas

Interactive, annotated similarity network of all proteins

3 resources found for BED

      • Genomics
      • , Transcriptomics
      • Software tool

    miRmap

    Prediction of microRNA target repression strength
      • Systems Biology
      • Transcriptomics
      • , Genomics
      • Software tool

    CRUNCH

    Automated pipeline for ChIP-seq data analysis
      • Genomics
      • , Transcriptomics
      • Systems Biology
      • Software tool

    ISMARA

    Webservice for gene expression and epigenetic data analysis