-
- Evolution & Phylogeny
-
- Software tool
raxmlGUI
raxmlGUI 2.0 is a graphical user interface to RAxML
Swiss-Trees
- Evolution & Phylogeny
- Database
The SwissTree project aims to provide a collection of 100 Gold Standard gene phylogenies to the scientific community. This set of reference gene trees is suitable for phylogenomic databases to assess their current quality status, measure changes following new database releases and diagnose improvements subsequent to an upgrade of the analysis procedure.
You might also be interested in
-
- Evolution biology
-
- Genomics
-
- Database
Selectome
Database of positive selection-
-
- Genes & Genomes
-
- Evolution & Phylogeny
-
- Database
-
- Software tool
SwissOrthology
One-stop shop for orthologs-
-
- Evolution & Phylogeny
-
- Database
OrthoDB
Ortholog evolutionary and functional annotations-
-
- Evolution & Phylogeny
-
- Database
OrthoDB SPARQL endpoint
SPARQL access to the OrthoDB catalog of orthologs-
-
- Genomics
- , Transcriptomics
-
- Evolution biology
-
- Software tool
BUSCO
From QC to gene prediction and phylogenomics-
-
- Evolution & Phylogeny
-
- Software tool
OrthoLoger
Accurate and scalable inference of groups of orthologs-
-
- Evolution & Phylogeny
-
- Database
-
- Software tool
OMA
Orthology inference among complete genomes-
-
- Evolution & Phylogeny
-
- Database
OMA SPARQL endpoint
SPARQL access to the OMA Orthology database-
-
- Evolution & Phylogeny
-
- Software tool
Phylo.io
A tool for visualising and comparing phylogenetic trees-
-
- Proteins & Proteomes
-
- Software tool
OMArk
OMArk determines the quality and completeness of gene sets-
-
- Genes & Genomes
-
- Software tool
ESTscan
Detect coding regions in EST sequences-
-
- Structural analysis
-
- Proteins & Proteomes
-
- Software tool
QMEAN
Protein model quality estimation-
-
- Proteins & Proteomes
-
- Structural Biology
-
- Database
-
- Software tool
CAMEO
Weekly automated benchmarking of protein structure modelling-
-
- Metagenomics
-
- Software tool
LEMMI
Continuous benchmarking of methods for metagenomics-