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UniProtKB/Swiss-Prot entry Q8L5W7


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PIF6_ARATH
Primary accession number Q8L5W7
Secondary accession numbers A8MSC2 Q9M1R5
Integrated into Swiss-Prot on December 16, 2008
Sequence was last modified on October 1, 2002 (Sequence version 1)
Annotations were last modified on    December 16, 2008 (Entry version 26)
Name and origin of the protein
Protein name Transcription factor PIF6
Synonyms Protein PHYTOCHROME-INTERACTING FACTOR 6
Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 2
Transcription factor EN 111
bHLH transcription factor bHLH132
Basic helix-loop-helix protein 132
bHLH 132
AtbHLH132
Gene name
Name: PIF6
Synonyms: BHLH132, EN111, PIL2
OrderedLocusNames: At3g62090
ORFNames: T17J13.50
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
DOI=10.1093/pcp/pcf005; PubMed=11828023 [NCBI, ExPASy, EBI, Israel, Japan]
Makino S., Matsushika A., Kojima M., Yamashino T., Mizuno T.;
"The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants.";
Plant Cell Physiol. 43:58-69(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
[4]
GENE FAMILY, AND NOMENCLATURE.
DOI=10.1093/molbev/msg088; PubMed=12679534 [NCBI, ExPASy, EBI, Israel, Japan]
Heim M.A., Jakoby M., Werber M., Martin C., Weisshaar B., Bailey P.C.;
"The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.";
Mol. Biol. Evol. 20:735-747(2003).
[5]
GENE FAMILY.
DOI=10.1105/tpc.013839; PubMed=12897250 [NCBI, ExPASy, EBI, Israel, Japan]
Toledo-Ortiz G., Huq E., Quail P.H.;
"The Arabidopsis basic/helix-loop-helix transcription factor family.";
Plant Cell 15:1749-1770(2003).
[6]
INTERACTION WITH APRR1/TOC1.
DOI=10.1093/pcp/pcg078; PubMed=12826627 [NCBI, ExPASy, EBI, Israel, Japan]
Yamashino T., Matsushika A., Fujimori T., Sato S., Kato T., Tabata S., Mizuno T.;
"A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.";
Plant Cell Physiol. 44:619-629(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB090874; BAC10690.1; -; pre-RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL138651; CAB71869.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT033108; ACF16169.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T48001; T48001.
RefSeq NP_001078329.1; -.
UniGene At.50304
3D structure databases
ModBase Q8L5W7.
Protein-protein interaction databases
IntAct Q8L5W7; 1.
Organism-specific databases
TAIR At3g62090; -.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR001092; HLH_basic.
Graphical view of domain structure.
Pfam PF00010; HLH; 1.
Pfam graphical view of domain structure.
SMART SM00353; HLH; 1.
SMART graphical view of domain structure.
PROSITE PS50888; HLH; 1.
PROSITE graphical view of domain structure (profiles).
Genome annotation databases
GeneID 825382; -.
GenomeReviews BA000014_GR; AT3G62090.
KEGG ath:AT3G62090; -.
NMPDR fig|3702.1.peg.17591; -.
Other
ProtoNet Q8L5W7.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Complete proteome; DNA-binding; Nucleus; Transcription; Transcription regulation.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   363  363     Transcription factor PIF6. PRO_0000358852
DOMAIN   202   242  41     Helix-loop-helix motif. 
DNA_BIND   185   201  17     Basic motif (By similarity). 
COMPBIAS   243   276  34     Met-rich. 
VAR_SEQ   1    17        Missing (in isoform 2). VSP_036113
Sequence information
Length: 363 AA [This is the length of the unprocessed precursor] Molecular weight: 40547 Da [This is the MW of the unprocessed precursor] CRC64: 15AD124E07949873 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY EAEYNEDFMK 

        70         80         90        100        110        120 
SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD DSETLKASSS KRMMVDYHNR 

       130        140        150        160        170        180 
KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR 

       190        200        210        220        230        240 
KALVKRKRNA EAYNSPERNQ RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ 

       250        260        270        280        290        300 
VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM 

       310        320        330        340        350        360 
LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK 


TNR 

Q8L5W7 in FASTA format

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