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[1]
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NUCLEOTIDE SEQUENCE [GENOMIC RNA].
PubMed=12466484 [NCBI, ExPASy, EBI, Israel, Japan]
Khan A.H.,
Morita K.,
Parquet Md Mdel C.,
Hasebe F.,
Mathenge E.G.,
Igarashi A.;
"Complete nucleotide sequence of chikungunya virus and evidence for an internal polyadenylation site.";
J. Gen. Virol. 83:3075-3084(2002).
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[2]
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NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Kinney R.M.,
Pfeffer M.;
"Nucleotide sequence analyses of the 26S mRNAs of viruses of the genus Alphavirus.";
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases.
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[3]
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NUCLEOTIDE SEQUENCE [GENOMIC RNA].
STRAIN=Isolate Ross;
Logue C.H.,
Atkins G.J.;
Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases.
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- FUNCTION: Capsid protein possesses a protease activity that results in its autocatalytic cleavage from the nascent structural protein. Following its self-cleavage, the capsid protein transiently associates with ribosomes, and within several minutes the protein binds to viral RNA and rapidly assembles into icosaedric core particles. The resulting nucleocapsid eventually associates with the cytoplasmic domain of E2 at the cell membrane, leading to budding and formation of mature virions. New virions attach to target cells, and after endocytosis their membrane fuses with the target cell membrane. This leads to the release of the nucleocapsid into the cytoplasm, followed by an uncoating event necessary for the genomic RNA to become accessible. The uncoating might be triggered by the interaction of capsid proteins with ribosomes. Binding of ribosomes would release the genomic RNA since the same region is genomic RNA-binding and ribosome-binding (By similarity).
- FUNCTION: E3 protein's function is unknown (By similarity).
- FUNCTION: E2 is responsible for viral attachment to target host cell, by binding to the cell receptor. Synthetized as a p62 precursor which is processed by furin at the cell membrane just before virion budding, giving rise to E2-E1 heterodimer. The p62-E1 heterodimer is stable, whereas E2-E1 is unstable and dissociate at low pH. p62 is processed at the last step, presumably to avoid E1 fusion activation before its final export to cell surface. E2 C-terminus contains a transitory transmembrane that would be disrupted by palmitoylation, resulting in reorientation of the C-terminal tail from lumenal to cytoplasmic side. This step is critical since E2 C-terminus is involved in budding by interacting with capsid proteins. This release of E2 C-terminus in cytoplasm occurs lately in protein export, and precludes premature assembly of particles at the endoplasmic reticulum membrane (By similarity).
- FUNCTION: 6K is a constitutive membrane protein involved in virus glycoprotein processing, membrane permeabilization, and the budding of viral particles. Because of its lipophilic properties, the 6K protein is postulated to influence the selection of lipids that interact with the transmembrane domains of the glycoproteins, which, in turn, affects the deformability of the bilayer required for the extreme curvature that occurs as budding proceeds (By similarity).
- FUNCTION: E1 is a class II viral fusion protein. Fusion activity is inactive as long as E1 is bound to E2 in mature virion. After virus attachment to target cell and endocytosis, acidification of the endosome would induce dissociation of E1/E2 heterodimer and concomitant trimerization of the E1 subunits. This E1 trimer is fusion active, and promotes release of viral nucleocapsid in cytoplasm after cell and viral membrane fusion. Efficient fusion requires the presence of cholesterol and sphingolipid in the target membrane (By similarity).
- SUBUNIT: p62 and E1 form a heterodimer shortly after synthesis. Processing of p62 into E2 and E3 results in a heterodimer of E2 and E1. Spike at virion surface are constituted of three E2-E1 heterodimers. After target cell attachment and endocytosis, E1 change conformation to form homotrimers (By similarity).
- SUBCELLULAR LOCATION: Capsid protein: Virion (By similarity). Cytoplasm (By similarity).
- SUBCELLULAR LOCATION: p62: Virion membrane; Single-pass type I membrane protein (By similarity). Cell membrane; Single-pass type I membrane protein (By similarity).
- SUBCELLULAR LOCATION: E2 envelope glycoprotein: Virion membrane; Single-pass type I membrane protein (By similarity). Cell membrane; Single-pass type I membrane protein (By similarity).
- SUBCELLULAR LOCATION: E1 envelope glycoprotein: Virion membrane; Single-pass type I membrane protein (By similarity). Cell membrane; Single-pass type I membrane protein (By similarity).
- SUBCELLULAR LOCATION: 6K protein: Cell membrane; Multi-pass membrane protein (By similarity). Virion membrane; Multi-pass membrane protein (By similarity).
- PTM: Specific enzymatic cleavages in vivo yield mature proteins. Capsid protein is auto-cleaved during polyprotein translation, unmasking p62 signal peptide. The remaining polyprotein is then targeted to the endoplasmic reticulum, where host signal peptidase cleaves it into p62, 6K and E1 proteins. p62 is further processed to mature E3 and E2 by host furin in trans-Golgi vesicle (By similarity).
- PTM: E2 is palmitoylated via thioester bonds. These palmitoylations may induce disruption of the C-terminus transmembrane. This would result in the reorientation of E2 c-terminus from lumenal to cytoplasmic side. 6K protein is also palmitoylated. E1 is stearoylated (By similarity).
- MISCELLANEOUS: Structural polyprotein is translated from a subgenomic RNA synthesized during togavirus replication.
- SIMILARITY: Contains 1 peptidase S3 domain [view classification].
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Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms.
Distributed under the Creative Commons Attribution-NoDerivs License.
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| Length: 1248 AA [This is the length of the unprocessed precursor] |
Molecular weight: 138088 Da [This is the MW of the unprocessed precursor] |
CRC64: A56982D67B774153 [This is a checksum on the sequence] |
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10 20 30 40 50 60
MEFIPTQTFY NRRYQPRPWT PRPTIQVIRP RPRPQRQAGQ LAQLISAVNK LTMRAVPQQK
70 80 90 100 110 120
PRKNRKNKKQ KQKQQAPQNN TNQKKQPPKK KPAQKKKKPG RRERMCMKIE NDCIFEVKHE
130 140 150 160 170 180
GKVTGYACLV GDKVMKPAHV KGTIDNADLA KLAFKRSSKY DLECAQIPVH MKSDASKFTH
190 200 210 220 230 240
EKPEGYYNWH HGAVQYSGGR FTIPTGAGKP GDSGRPIFDN KGRVVAIVLG GANEGARTAL
250 260 270 280 290 300
SVVTWNKDIV TKITPEGAEE WSLAIPVMCL LANTTFPCSQ PPCIPCCYEK EPEETLRMLE
310 320 330 340 350 360
DNVMRPGYYQ LLQASLTCSP HRQRRSTKDN FNVYKATRPY LAHCPDCGEG HSCHSPVALE
370 380 390 400 410 420
RIRNEATDGT LKIQVSLQIG IGTDDSHDWT KLRYMDNHIP ADAGRAGLFV RTSAPCTITG
430 440 450 460 470 480
TMGHFILARC PKGETLTVGF TDSRKISHSC THPFHHDPPV IGREKFHSRP QHGKELPCST
490 500 510 520 530 540
YVQSNAATAE EIEVHMPPDT PDRTLLSQQS GNVKITVNSQ TVRYKCNCGG SNEGLITTDK
550 560 570 580 590 600
VINNCKVDQC HAAVTNHKKW QYNSPLVPRN AELGDRKGKI HIPFPLANVT CMVPKARNPT
610 620 630 640 650 660
VTYGKNQVIM LLYPDHPTLL SYRSMGEEPN YQEEWVTHKK EVVLTVPTEG LEVTWGNNEP
670 680 690 700 710 720
YKYWPQLSAN GTAHGHPHEI ILYYYELYPT MTVVVVSVAS FILLSMVGMA VGMCMCARRR
730 740 750 760 770 780
CITPYELTPG ATVPFLLSLI CCIRTAKAAT YQEAAVYLWN EQQPLFWLQA LIPLAALIVL
790 800 810 820 830 840
CNCLRLLPCC CKTLAFLAVM SIGAHTVSAY EHVTVIPNTV GVPYKTLVNR PGYSPMVLEM
850 860 870 880 890 900
ELLSVTLEPT LSLDYITCEY KTVIPSPYVK CCGTAECKDK NLPDYSCKVF TGVYPFMWGG
910 920 930 940 950 960
AYCFCDAENT QLSEAHVEKS ESCKTEFASA YRAHTASASA KLRVLYQGNN ITVTAYANGD
970 980 990 1000 1010 1020
HAVTVKDAKF IVGPMSSAWT PFDNKIVVYK GDVYNMDYPP FGAGRPGQFG DIQSRTPESK
1030 1040 1050 1060 1070 1080
DVYANTQLVL QRPAAGTVHV PYSQAPSGFK YWLKERGASL QHTAPFGCQI ATNPVRAMNC
1090 1100 1110 1120 1130 1140
AVGNMPISID IPDAAFTRVV DAPSLTDMSC EVPACTHSSD FGGVAIIKYA VSKKGKCAVH
1150 1160 1170 1180 1190 1200
SMTNAVTIRE AEIEVEGNSQ LQISFSTALA SAEFRVQVCS TQVHCAAECH PPKDHIVNYP
1210 1220 1230 1240
ASHTTLGVQD ISATAMSWVQ KITGGVGLVV AVAALILIVV LCVSFSRH
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Q8JUX5 in FASTA format |
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