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UniProtKB/Swiss-Prot entry Q8EE60


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DEF3_SHEON
Primary accession number Q8EE60
Secondary accession numbers None
Integrated into Swiss-Prot on June 27, 2003
Sequence was last modified on March 1, 2003 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 36)
Name and origin of the protein
Protein name Peptide deformylase 3
Synonyms PDF 3
EC 3.5.1.88
Polypeptide deformylase 3
Gene name
Name: def3
OrderedLocusNames: SO_2530
From
Shewanella oneidensis [TaxID: 70863] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=MR-1;
DOI=10.1038/nbt749; PubMed=12368813 [NCBI, ExPASy, EBI, Israel, Japan]
Heidelberg J.F., Paulsen I.T., Nelson K.E., Gaidos E.J., Nelson W.C., Read T.D., Eisen J.A., Seshadri R., Ward N.L., Methe B.A., Clayton R.A., Meyer T., Tsapin A., Scott J., Beanan M.J., Brinkac L.M., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Haft D.H., Kolonay J.F., Madupu R., Peterson J.D., Umayam L.A., White O., Wolf A.M., Vamathevan J.J., Weidman J.F., Impraim M., Lee K., Berry K.J., Lee C., Mueller J., Khouri H.M., Gill J., Utterback T.R., McDonald L.A., Feldblyum T.V., Smith H.O., Venter J.C., Nealson K.H., Fraser C.M.;
"Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.";
Nat. Biotechnol. 20:1118-1123(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE014299; AAN55560.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_718116.1; -.
3D structure databases
HSSP P27251; 1DEF. [HSSP ENTRY / PDB]
ModBase Q8EE60.
Enzyme and pathway databases
BioCyc SONE211586:SO_2530-MON; -.
Ontologies
GO
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0042586; Molecular function: peptide deformylase activity (inferred from electronic annotation from HAMAP).
GO:0006412; Biological process: translation (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00163; -; 1.
PBIL [Tree]
InterPro IPR000181; Fmet_deformylase.
Graphical view of domain structure.
Gene3D G3DSA:3.90.45.10; Fmet_deformylase; 1.
PANTHER PTHR10458; Fmet_deformylase; 1.
Pfam PF01327; Pep_deformylase; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF004749; Pep_def; 1.
PRINTS PR01576; PDEFORMYLASE.
ProDom PD003844; Fmet_deformylase; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00079; pept_deformyl; 1.
Genome annotation databases
GeneID 1170239; -.
GenomeReviews AE014299_GR; SO_2530.
KEGG son:SO_2530; -.
NMPDR fig|211586.1.peg.2293; -.
TIGR SO_2530; -.
Phylogenomic databases
HOGENOM Q8EE60; -.
Other
ProtoNet Q8EE60.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Hydrolase; Iron; Metal-binding; Protein biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   163  163     Peptide deformylase 3. PRO_0000082836
ACT_SITE   134   134        By similarity. 
METAL   91    91        Iron (By similarity). 
METAL   133   133        Iron (By similarity). 
METAL   137   137        Iron (By similarity). 
Sequence information
Length: 163 AA [This is the length of the unprocessed precursor] Molecular weight: 18221 Da [This is the MW of the unprocessed precursor] CRC64: A4A06C2952DB92EE [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAVLDILTIP DERLKRKAQP VKDIEAIQGF IDDLIETMYH TDDGIGLAST QVGSTDAVIV 

        70         80         90        100        110        120 
IDLSETRDQP LVLVNPEIVE KSGEYVGEEG CLSIPGYRAK VTRFEKVKVT ALDRQGKAIE 

       130        140        150        160 
IETDDFLAIV LQHEIDHLHG KVFIEHLSTL KQQIALKKVR KYA 

Q8EE60 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

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