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HAMAP proteomes: Plastids


Proteomes by kingdom: [Summary] Bacteria Archaea Plastids

[complete plastid genomes][plastid genes encoding proteins]

List of complete plastid genomes

The UniProt Knowledgebase currently contains 145 complete plastid proteomes that are covered by the HAMAP project
(e.g. chloroplast, cyanelle, apicoplast, non-photosynthetic plastid).

More information about a particular plastid genome can be retrieved by clicking on the EMBL genome accession number(s).
You can also retrieve all the protein(s) encoded by a particular complete plastid genome by clicking on the protein count.

UniProtKB/Swiss-Prot Release 57.15 of 02-Mar-2010
UniProtKB/TrEMBL Release 40.15 of 02-Mar-2010

Statistics
Species
Species code
EMBL genome
Total number
of entries
Number of UniProtKB/
Swiss-Prot entries
Number of UniProtKB/
TrEMBL entries
Status in UniProtKB/
Swiss-Prot







Acorus americanus (Sweetflag) ACOAM EU273602 79 32 47
   40%
Acorus calamus (Sweet flag) ACOCL AJ879453 79 72 7
   91%
Adiantum capillus-veneris (Fern) ADICA AY178864 91 84 7
   92%
Aethionema cordifolium (Lebanon stonecress) AETCO AP009366 77 64 13
   83%
Aethionema grandiflorum (Persian stone-cress) AETGR AP009367 77 64 13
   83%
Agrostis stolonifera (Creeping bentgrass) AGRST EF115543 91 78 13
   85%
Amborella trichopoda. AMBTC AJ506156 94 81 13
   86%
Aneura mirabilis (Parasitic liverwort) ANEMR EU043314 62 33 29
   53%
Angiopteris evecta (Mule's foot fern) ANGEV DQ821119 86 69 17
   80%
Anthoceros formosae (Hornwort) ANTFO AB086179 106 89 17
   83%
Arabidopsis thaliana (Mouse-ear cress) ARATH AP000423 93 80 13
   86%
Arabis hirsuta (Hairy rock-cress) ARAHI AP009369 78 65 13
   83%
Astasia longa (Euglenophycean alga) ASTLO AJ294725 58 45 13
   77%
Atropa belladonna (Belladonna) ATRBE AJ316582 95 82 13
   86%
Barbarea verna (Land cress) BARVE AP009370 79 65 14
   82%
Bigelowiella natans (Pedinomonas minutissima) BIGNA DQ851108 71 57 14
   80%
Brachypodium distachyon (Purple false brome) BRADI EU325680 75 31 44
   41%
Buxus microphylla (Little leaf boxwood) BUXMI EF380351 80 65 15
   81%
Calycanthus floridus var. glaucus CALFG AJ428413 97 82 15
   84%
Capsella bursa-pastoris (Shepherd's purse) CAPBU AP009371 80 65 15
   81%
Carica papaya (Papaya) CARPA EU431223 79 48 31
   60%
Ceratophyllum demersum (Rigid hornwort) CERDE EF614270 80 62 18
   77%
Chaetosphaeridium globosum CHAGL AF494278 95 86 9
   90%
Chara vulgaris CHAVU DQ229107 104 83 21
   79%
Chlamydomonas reinhardtii CHLRE FJ423446, BK000554 76 75 1
   98%
Chloranthus spicatus (Chulantree) CHLSC EF380352 82 66 16
   80%
Chlorella vulgaris (Green alga) CHLVU AB001684 104 88 16
   84%
Chlorokybus atmophyticus (Soil alga) CHLAT DQ422812 113 72 41
   63%
Cicer arietinum (Chickpea) (Garbanzo) CICAR EU835853 75 25 50
   33%
Citrus sinensis (Sweet orange) CITSI DQ864733 80 78 2
   97%
Coffea arabica (Coffee) COFAR EF044213 83 81 2
   97%
Crucihimalaya wallichii (Rock-cress) CRUWA AP009372 81 66 15
   81%
Cryptomeria japonica (Japanese cedar) CRYJA AP009377 82 44 38
   53%
Cucumis sativus (Cucumber) CUCSA AJ970307, DQ119058, DQ865975, DQ865976 119 81 38
   68%
Cuscuta exaltata (Tall dodder) CUSEX EU189132 65 48 17
   73%
Cuscuta gronovii (Common dodder) CUSGR AM711639 59 44 15
   74%
Cuscuta obtusiflora (Peruvian dodder) CUSOB EU189133 59 37 22
   62%
Cuscuta reflexa (Southern Asian dodder) CUSRE AM711640 67 55 12
   82%
Cyanidioschyzon merolae (Red alga) CYAME AB002583 207 100 107
   48%
Cyanidium caldarium CYACA AF022186 197 160 37
   81%
Cyanophora paradoxa CYAPA U30821 252 145 107
   57%
Cycas taitungensis (Prince sago) CYCTA AP009339 110 66 44
   60%
Daucus carota (Carrot) DAUCA DQ898156 124 80 44
   64%
Dioscorea elephantipes (Elephant's foot) DIOEL EF380353 80 65 15
   81%
Draba nemorosa (Woodland whitlowgrass) DRANE AP009373 78 65 13
   83%
Drimys granadensis DRIGR DQ887676 94 81 13
   86%
Eimeria tenella EIMTE AY217738 28 6 22
   21%
Emiliania huxleyi EMIHU AY741371 119 83 36
   69%
Ephedra equisetina (Ma huang, Joint-fir) EPHEU AP010819 151 83 68
   54%
Epifagus virginiana (Beechdrops) EPIVI M81884 89 21 68
   23%
Eucalyptus globulus sp. globulus (Tasmanian blue gum) EUCGG AY780259 147 79 68
   53%
Euglena gracilis EUGGR X70810 135 67 68
   49%
Fagopyrum esculentum subsp. ancestrale (Wild buckwheat) FAGEA EU254477 78 34 44
   43%
Festuca arundinacea (Tall fescue) FESAR FJ466687 75 1 74
   1%
Glycine max (Soybean) SOYBN DQ317523 82 79 3
   96%
Gnetum parvifolium GNEPA AP009569 64 33 31
   51%
Gossypium barbadense (Sea-island cotton) GOSBA AP009123 110 79 31
   71%
Gossypium hirsutum (Upland cotton) GOSHI DQ345959 110 79 31
   71%
Gracilaria tenuistipitata var. liui (Red alga) GRATL AY673996 203 125 78
   61%
Guillardia theta (Cryptomonas phi) GUITH AF041468 184 147 37
   79%
Guizotia abyssinica (Niger) GUIAB EU549769 80 43 37
   53%
Helianthus annus (Common sunflower) HELAN DQ383815 118 81 37
   68%
Helicosporidium sp. subsp. Simulium jonesii HELSJ DQ398104 63 26 37
   41%
Heterosigma akashiwo (strain CCMP452) HETA4 EU168191 143 11 132
   7%
Heterosigma akashiwo (strain NIES-293) HETA2 EU168190 143 11 132
   7%
Hordeum vulgare (Barley) HORVU EF115541 209 77 132
   36%
Huperzia lucidula (Shining clubmoss) HUPLU AY660566 86 76 10
   88%
Illicium oligandrum ILLOL EF380354 82 66 16
   80%
Ipomoea purpurea (Common morning glory) IPOPU EU118126 80 59 21
   73%
Jasminum nudiflorum (Winter jasmine) JASNU DQ673255 80 79 1
   98%
Keteleeria davidiana KETDA AP010820 74 2 72
   2%
Lactuca sativa (Garden lettuce) LACSA AP007232, DQ383816 83 80 3
   96%
Lemna minor (Common duckweed) LEMMI DQ400350 79 52 27
   65%
Lepidium virginicum (Virginia pepperweed) LEPVR AP009374 80 65 15
   81%
Leptosira terrestris (Pleurastrum terrestre) LEPTE EF506945 88 41 47
   46%
Liriodendron tulipifera (Tuliptree) LIRTU DQ899947 96 81 15
   84%
Lobularia maritima (Sweet alyssum) LOBMA AP009375 79 64 15
   81%
Lolium perenne (Perennial ryegrass) LOLPR AM777385 78 57 21
   73%
Lotus japonicus LOTJA AP002983 99 78 21
   78%
Manihot esculenta (Cassava) (Manioc) MANES EU117376 79 47 32
   59%
Marchantia polymorpha (Liverwort) MARPO X04465 124 92 32
   74%
Mesostigma viride MESVI AF166114 137 105 32
   76%
Morus indica (Mulberry) MORIN DQ226511 111 79 32
   71%
Nandina domestica (Heavenly bamboo) NANDO DQ923117 81 70 11
   86%
Nasturtium officinale (Water-cress) NASOF AP009376 79 65 14
   82%
Nephroselmis olivacea NEPOL AF137379 124 87 37
   70%
Nicotiana sylvestris (Wood tobacco) NICSY AB237912 95 80 15
   84%
Nicotiana tabacum (Common tobacco) TOBAC Z00044 96 81 15
   84%
Nicotiana tomentosiformis (Tobacco) NICTO AB240139 94 80 14
   85%
Nuphar advena (Common spatterdock) NUPAD DQ354691 80 34 46
   42%
Nymphaea alba (White water-lily) NYMAL AJ627251 82 81 1
   98%
Odontella sinensis (Marine centric diatom) ODOSI Z67753 138 137 1
   99%
Oedogonium cardiacum (Filamentous green alga) OEDCA EU677193 83 20 63
   24%
Oenothera argillicola (Appalachian evening primrose) OENAR EU262887 79 49 30
   62%
Oenothera biennis (German evening primrose) OENBI EU262889 79 47 32
   59%
Oenothera elata sb. hookeri (Hooker's evening primrose) OENEH AJ271079 111 79 32
   71%
Oenothera glazioviana (Large-flowered evening primrose) OENGL EU262890 79 47 32
   59%
Oenothera parviflora (Small-flowered evening primrose) OENPA EU262891 79 47 32
   59%
Olimarabidopsis pumila (Dwarf rocket) OLIPU AP009368 79 65 14
   82%
Oltmannsiellopsis viridis (Marine flagellate) OLTVI DQ291132 83 67 16
   80%
Oryza nivara (Indian wild rice) ORYNI AP006728 98 82 16
   83%
Oryza sativa (Rice) ORYSA AY522331 99 83 16
   83%
Oryza sativa subsp. indica (Rice) ORYSI AY522329 99 83 16
   83%
Oryza sativa subsp. japonica (Rice) ORYSJ X15901, AY522330 99 83 16
   83%
Ostreococcus tauri OSTTA CR954199 76 60 16
   78%
Panax ginseng (Korean ginseng) PANGI AY582139 97 81 16
   83%
Pelargonium hortorum (Common geranium) PELHO DQ897681 84 79 5
   94%
Phaeodactylum tricornutum (Marine diatom) PHATR EF067920 130 99 31
   76%
Phalaenopsis aphrodite subsp. formosana (Moth orchid) PHAAO AY916449 91 68 23
   74%
Phaseolus vulgaris (Kidney bean) (French bean) PHAVU DQ886273, EU196765 77 64 13
   83%
Physcomitrella patens (Moss) PHYPA AP005672 87 74 13
   85%
Pinus koraiensis (Korean pine) PINKO AY228468 367 70 297
   19%
Pinus thunbergii (Green pine) (Japanese black pine) PINTH D17510 157 74 83
   47%
Piper cenocladum (Ant piper) PIPCE DQ887677 82 81 1
   98%
Plasmodium falciparum PLAFA X95275, X95276 5 4 1
   80%
Platanus occidentalis (Sycamore) PLAOC DQ923116 80 70 10
   87%
Populus alba (White poplar) POPAL AP008956 77 76 1
   98%
Populus trichocarpa (Western balsam poplar) POPTR EF489041 88 68 20
   77%
Porphyra purpurea PORPU U38804 229 209 20
   91%
Porphyra yezoensis PORYE AP006715 225 205 20
   91%
Pseudendoclonium akinetum (Green alga) PSEAK AY835431 104 64 40
   61%
Psilotum nudum (Whisk fern) PSINU AP004638 90 79 11
   87%
Ranunculus macranthus (Large buttercup) RANMC DQ359689 79 37 42
   46%
Rhodomonas salina (Cryptomonas salina) RHDSA EF508371 146 56 90
   38%
Saccharum hybrid (Sugarcane) SACHY AE009947 170 80 90
   47%
Saccharum officinarum (Sugarcane) SACOF AP006714 173 83 90
   47%
Scenedesmus obliquus SCEOB DQ396875 75 65 10
   86%
Selaginella uncinata (Blue spikemoss) SELUN AB197035 77 8 69
   10%
Solanum bulbocastanum (Wild potato) SOLBU DQ347958 81 78 3
   96%
Solanum lycopersicum (Tomato) SOLLC DQ347959, AM087200 83 80 3
   96%
Solanum tuberosum (Potato) SOLTU DQ231562, DQ386163 83 80 3
   96%
Sorghum bicolor (Sorghum) SORBI EF115542 81 78 3
   96%
Spinacia oleracea (Spinach) SPIOL AJ400848 91 80 11
   87%
Staurastrum punctulatum (Green alga) STAPU AY958085 103 83 20
   80%
Stigeoclonium helveticum STIHE DQ630521 79 61 18
   77%
Thalassiosira pseudonana (Marine diatom) THAPS EF067921 127 93 34
   73%
Toxoplasma gondii TOXGO U87145 26 7 19
   26%
Trachelium caeruleum (Blue throatwort) TRACE EU090187 74 15 59
   20%
Trifolium subterraneum (Subterranean clover) TRISU EU849487 69 2 67
   2%
Triticum aestivum (Wheat) WHEAT AB042240 106 77 29
   72%
Vaucheria litorea (Chromophytic alga) VAULI EU912438 139 3 136
   2%
Vitis vinifera (Grape) VITVI DQ424856 81 79 2
   97%
Welwitschia mirabilis (Tree tumbo) WELMI EU342371, AP009568 77 48 29
   62%
Zea mays (Maize) MAIZE X86563 105 84 21
   80%
Zygnema circumcarinatum (Green alga) ZYGCR AY958086 103 83 20
   80%


List of plastid genes encoding proteins

The UniProt Knowledgebase currently contains 145 complete plastid proteomes that are covered by the HAMAP project
(e.g. chloroplast, cyanelle, apicoplast, non-photosynthetic plastid).

For each gene, you can retrieve the encoded protein(s) either for a selected organism or for all organisms.

UniProtKB/Swiss-Prot Release 57.15 of 02-Mar-2010
UniProtKB/TrEMBL Release 40.15 of 02-Mar-2010

Plastid-encoded proteins
gene

protein

protein(s)
by organism for all organisms




accA Acetyl-CoA carboxylase carboxyl transferase alpha 5
accB Acetyl-CoA carboxylase biotin carrier protein 5
accD Acetyl-CoA carboxylase carboxyl transferase beta 102
acpP Acyl carrier protein 12
acsF Mg-protoporphyrin IX monomethyl ester oxidative cyclase 7
apcA Allophycocyanin (APC) alpha chain 6
apcB Allophycocyanin (APC) beta chain 6
apcD Allophycocyanin (APC) alpha-B (gamma) chain 6
apcE Phycobilisome linker polypeptide 6
apcF Allophycocyanin (APC) B18 chain 6
argB Acetylglutamate kinase 5
atpA ATP synthase CF1 alpha chain 140
atpB ATP synthase CF1 beta chain 139
atpD ATP synthase CF1 delta chain 15
atpE ATP synthase CF1 epsilon chain 144
atpF ATP synthase CF0 B chain (subunit I) 140
atpG ATP synthase CF0 B' chain (subunit II) 15
atpH ATP synthase CF0 C chain (subunit III) 133
atpI ATP synthase CF0 A chain (subunit IV) 138
carA Carbamoyl phosphate synthetase small subunit 5
ccs1 Cytochrome c biogenesis protein ccs1 12
ccsA Cytochrome c biogenesis protein