HAMAP links

ExPASy Home page

Site Map

Search ExPASy

Contact us

HAMAP

Swiss-Prot

The ExPASy Server requires Javascript to be fully functional. You may not see all the information available for this page (More information).

HAMAP links

This list contains links to some microbe-specific resources. These links as well as many more are also available from the ExPASy Life Science Directory and the UniProtKB/Swiss-Prot Documentation.

[Bacteria][Archaea][UniProtKB/Swiss-Prot documents]

Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature List of complete bacterial proteomes in Swiss-Prot (HAMAP) CBS - CBS Genome Atlas Database CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GeneQuiz GOLD Genomes On-line Database HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism EchoBASE GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Institute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ Regulon DB B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db DBTBS - Db of B.subtilis promoters and transcription factors A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute BbDB - TIGR Borrelia burgdorferi genome db B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db Chromobacterium violaceum C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute DrDB - TIGR Deinococcus radiodurans strain R1 genome db H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries HiDB - Haemophilus influenzae genome db at TIGR H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries HpDB - Helicobacter pylori strain 26695 genome db at TIGR PyloriGene - Helicobacter pylori genomic db L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project ListiList - Listeria monocytogenes and Listeria innocua genome db M.bovis - Mycobacterium bovis strain AF2122/97 genome project Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute M.tuberculosis structural genomics consortium M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries MgDB - Mycoplasma genitalium genome db at TIGR M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis genome db Mycoplasma synoviae genome db N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute S.suis - Streptococcus suis genome project at Sanger Institute S.uberis - Streptococcus uberis genome project at Sanger Institute S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries CyanoBase - Synechocystis PCC 6803 db TmDB - Thermotoga maritima genome db at TIGR TpDB - Treponema pallidum genome db at TIGR T.whipplei - Tropheryma whipplei genome project at Sanger Institute U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - Vibrio cholerae genome db at TIGR X.fastidiosa - Xylella fastidiosa genome WWW site Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute

Bacteria

WDCM - World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
List of complete bacterial proteomes in Swiss-Prot (HAMAP)
CBS - CBS Genome Atlas Database
CMR - TIGR Comprehensive Microbial Ressource
GIB - Genome information broker for Microbial genomes
GeneQuiz
GOLD Genomes On-line Database
HOBACGEN - Homologous Bacterial Genes db
Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen
BPGD - Bacterial polysaccharide gene db
Bacterial quorum sensing
MicrobeWorld - Educational site on microbes
E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries
EcoWeb / EcoGene - Very comprehensive E.coli db
ECCE - E.coli Cell Envelope Protein Data Collection
ECDC - E.coli db collection
EcoCyc - Encyclopedia of E.coli genes and metabolism
EchoBASE
GenProtEC - E.coli genome and proteome db
Colibri - E.coli genome db from Pasteur Institute
ECGC - E.coli Genome Center at Wisconsin University
DDBJ E.coli - E.coli home page at DDBJ
Regulon DB
B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries
SubtiList - Bacillus subtilis genomic db
NRSub - Bacillus subtilis non-redundant db
DBTBS - Db of B.subtilis promoters and transcription factors
A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site
B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project
B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute
B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute
B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute
BbDB - TIGR Borrelia burgdorferi genome db
B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries
C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project
C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR
C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR
C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db
Chromobacterium violaceum
C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute
C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute
C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute
E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute
DrDB - TIGR Deinococcus radiodurans strain R1 genome db
H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries
HiDB - Haemophilus influenzae genome db at TIGR
H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries
HpDB - Helicobacter pylori strain 26695 genome db at TIGR
PyloriGene - Helicobacter pylori genomic db
L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db
L.plantarum - Lactobacillus plantarum genome project
ListiList - Listeria monocytogenes and Listeria innocua genome db
M.bovis - Mycobacterium bovis strain AF2122/97 genome project
Leproma - Mycobacterium leprae strain TN genome db
M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute
TubercuList - Mycobacterium tuberculosis strain H37Rv genome db
MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR
M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute
M.tuberculosis structural genomics consortium
M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries
MgDB - Mycoplasma genitalium genome db at TIGR
M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries
M.pneumoniae - Mycoplasma pneumoniae genome project
MypuList - Mycoplasma pulmonis genome db
Mycoplasma synoviae genome db
N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute
N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea - Nitrosomonas europaea genome project
P.marinus - Prochlorococcus marinus genome project
P.aeruginosa project - Pseudomonas aeruginosa genome project
R.solanacearum - Ralstonia solanacearum genome project
Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries
Rhizobium pNGR234a analysis
RsGDB - Rhodobacter sphaeroides genome db
R.palustris - Rhodopseudomonas palustris genome project
RicBase - Rickettsia conorii strain Malish 7 genome project
R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries
S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute
S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries
RhizoBase - Sinorhizobium loti genome project
S.meliloti - Sinorhizobium meliloti genome project
S.aureus - Staphylococcus aureus strain NCTC 8325 genome project
S.mutans - Streptococcus mutans strain UAB159 genome project
S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project
S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute
S.suis - Streptococcus suis genome project at Sanger Institute
S.uberis - Streptococcus uberis genome project at Sanger Institute
S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute
S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project
PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries
CyanoBase - Synechocystis PCC 6803 db
TmDB - Thermotoga maritima genome db at TIGR
TpDB - Treponema pallidum genome db at TIGR
T.whipplei - Tropheryma whipplei genome project at Sanger Institute
U.urealyticum - Ureaplasma urealyticum genome WWW site
VcDB - Vibrio cholerae genome db at TIGR
X.fastidiosa - Xylella fastidiosa genome WWW site
Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute
Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute

Archaea
List of complete archaeal proteomes in Swiss-Prot (HAMAP) A.pernix - Aeropyrum pernix K1 genome db AfDB - Archaeoglobus fulgidus genome db at TIGR Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries MjDB - Methanococcus jannaschii genome db at TIGR Pyrococcus abyssi genome and re-annotation db T.volcanium - Thermoplasma volcanium genome project

Archaea

List of complete archaeal proteomes in Swiss-Prot (HAMAP)
A.pernix - Aeropyrum pernix K1 genome db
AfDB - Archaeoglobus fulgidus genome db at TIGR
Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project
M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries
MjDB - Methanococcus jannaschii genome db at TIGR
Pyrococcus abyssi genome and re-annotation db
T.volcanium - Thermoplasma volcanium genome project

UniProtKB/Swiss-Prot documents
List of bacteria that are known to interact with other organisms Escherichia coli strain K12: entries and cross-references to EcoGene Index of Escherichia coli Gene-protein database (ECO2DBASE) entries referenced in Swiss-Prot Bacillus subtilis strain 168: entries, gene names and cross-references to SubtiList Brucella abortus strain 2308: entries and gene names Brucella abortus: entries and gene names Brucella melitensis: entries and gene names Brucella suis: entries and gene names Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names Coxiella burnetii: entries and gene names Haemophilus influenzae strain Rd: entries and gene names Helicobacter pylori strain 26695: entries and gene names Methanococcus jannaschii: entries and gene names Mycoplasma genitalium strain G-37: entries and gene names Mycoplasma pneumoniae strain M129: entries and gene names Rhizobium plasmid pNGR234a: entries and gene names Rickettsia bellii strain RML369-C: entries and gene names Rickettsia conorii: entries and gene names Rickettsia felis (Rickettsia azadi): entries and gene names Rickettsia prowazekii strain Madrid E: entries and gene names Rickettsia typhi: entries and gene names Salmonella typhimurium strain LT2: entries, gene names and cross-references to StyGene Synechocystis strain PCC 6803: entries and gene names

UniProtKB/Swiss-Prot documents

List of bacteria that are known to interact with other organisms

Last modified 06-Sep-2008

ExPASy Home page

Site Map

Search ExPASy

Contact us

HAMAP

Swiss-Prot

Hosted by

Mirror sites:

The ExPASy Server requires Javascript to be fully functional. You may not see all the information available for this page (More information).