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HAMAP: Streptomyces coelicolor complete proteome

General information

Species:  Streptomyces coelicolor
Species code: STRCO
Taxonomy: Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces (TaxID: 1902) [NEWT/ NCBI]
Description: The genus Streptomyces consists of soil and water Gram positive filamentous bacteria well known for their ability to produce complex secondary metabolites including many antibiotics. Additionally they undergo complex multicellular development, with spores germinating to form a branched, multinucleoid substrate mycelium, which then produces an aerial mycelium which septates into uninucleoid spores. Streptomyces is also unusual in having linear chromosomes with terminal inverted repeats with terminal proteins covalently bound to their 5' ends.
Streptomyces coelicolor A3(2) is a well studied member of the genus. It contains 21 cluster of genes for the production of secondary metabolites.
Properties: Presence of flagella: No
Interaction: No
Number of membranes: 1
Number of inteins:0
Statistics: Number of STRCO entries in the UniProt Knowledgebase: 8038 (706 in UniProtKB/Swiss-Prot + 7332 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC BAA-471 / A3(2) / M145
Genome structure:
• Chromosome EMBL accession number AL645882 (linear; 8,667,507 bp) (download entry) (download Genome Reviews).
• Plasmid SCP1 EMBL accession number AL589148 (linear; 356,023 bp) (download entry) (download Genome Reviews).
• Plasmid SCP2 EMBL accession number AL645771 (circular; 31,317 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] MEDLINE=21996410; PubMed=12000953; [ NCBI , EBI , Israel , Japan ]
Bentley S.D., Chater K.F., Cerdeno-Tarraga A.-M., Challis G.L., Thomson N.R., James K.D., Harris D.E., Quail M.A., Kieser H., Harper D., Bateman A., Brown S., Chandra G., Chen C.W., Collins M., Cronin A., Fraser A., Goble A., Hidalgo J., Hornsby T., Howarth S., Huang C.-H., Kieser T., Larke L., Murphy L.D., Oliver K., O'Neil S., Rabbinowitsch E., Rajandream M.A., Rutherford K.M., Rutter S., Seeger K., Saunders D., Sharp S., Squares R., Squares S., Taylor K., Warren T., Wietzorrek A., Woodward J.R., Barrell B.G., Parkhill J., Hopwood D.A. ;
"Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).";
Nature 417:141-147(2002).
Web links:
Official genome site(s):
http://www.sanger.ac.uk/Projects/S_coelicolor/
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Streptomyces&GLspecies=coelicolor&GLstrain=A3
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid100226%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Scoe_A3
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Streptomyces_coelicolor.html
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p242_Str_coeli
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=ntsc02
 EBI Proteome Analysis page



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