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HAMAP: Nitrobacter hamburgensis (strain X14 / DSM 10229) complete proteome

General information

Species:  Nitrobacter hamburgensis (strain X14 / DSM 10229)
Species code: NITHX
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter (TaxID: 323097) [NEWT/ NCBI]
Description: Nitrobacter hamburgensis (strain X14 / DSM 10229) is a rod-shaped, motile, aerobe alpha-proteobacterium. N. hamburgensis is a facultatively lithoautotrophic bacterium that gains energy from the oxidation of nitrite to nitrate (nitrification). It is ubiquitous in nature and has been isolated from several environments, including soil, building sandstone, and sewage sludge. In addition to growing lithoautotrophically, Nitrobacter hamburgensis is able to grow mixotrophically with NO2 and organic components or heterotrophically solely with organic components. It can be used in biotechnology for efficient transformation of fertilizer nitrogen in agricultural systems, and is a key component of nitrogen removal in wastewater treatment.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of NITHX entries in the UniProt Knowledgebase: 4243 (343 in UniProtKB/Swiss-Prot + 3900 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    X14 / DSM 10229
Genome structure:
• Chromosome EMBL accession number CP000319 (circular; 4,406,967 bp) (download entry) (download Genome Reviews).
• Plasmid pNITHX1 EMBL accession number CP000320 (circular; 294,829 bp) (download entry) (download Genome Reviews).
• Plasmid pNITHX2 EMBL accession number CP000321 (circular; 188,318 bp) (download entry) (download Genome Reviews).
• Plasmid pNITHX3 EMBL accession number CP000322 (circular; 121,408 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P. ;
"Complete sequence of chromosome of Nitrobacter hamburgensis X14.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
[2] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P. ;
"Complete sequence of plasmid 1 of Nitrobacter hamburgensis X14.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
[3] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P. ;
"Complete sequence of plasmid 2 of Nitrobacter hamburgensis X14.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
[4] Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P. ;
"Complete sequence of plasmid 3 of Nitrobacter hamburgensis X14.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/nitha/nitha.home.html
Other web sites:
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Nitrobacter&GLspecies=hamburgensis&GLsupStrain=X14
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid323097%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Nham_X14
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p13473_Nit_hambu
RhizoDB: http://xbase.bham.ac.uk/rhizodb/genome.pl?id=1194
 EBI Proteome Analysis page



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