ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
Search for

HAMAP: Borrelia burgdorferi (Lyme disease spirochete) complete proteome

General information

Species:  Borrelia burgdorferi (Lyme disease spirochete)
Species code: BORBU
Taxonomy: Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group (TaxID: 139) [NEWT/ NCBI]
Description: Spirochete spiral-shaped bacterium. Highly specialized, motile, with two membranes, it lives primarily as an extracellular pathogen. It is the causative agent of Lyme borreliosis. It was first isolated in the early 1980s from the midgut of Ixodes ticks.
Properties: Presence of flagella: Yes
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of BORBU entries in the UniProt Knowledgebase: 1556 (419 in UniProtKB/Swiss-Prot + 1137 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 35210 / B31 / CIP 102532 / DSM 4680
Genome structure
• Chromosome EMBL accession number AE000783 (linear; 910,724 bp) (download entry) (download Genome Reviews).
• Plasmid lp54 EMBL accession number AE000790 (linear; 53,561 bp) (download entry) (download Genome Reviews).
• Plasmid cp26 EMBL accession number AE000792 (circular; 26,498 bp) (download entry) (download Genome Reviews).
• Plasmid cp9 EMBL accession number AE000791 (circular; 9,386 bp) (download entry) (download Genome Reviews).
• Plasmid lp17 EMBL accession number AE000793 (linear; 16,823 bp) (download entry) (download Genome Reviews).
• Plasmid lp25 EMBL accession number AE000785 (linear; 24,177 bp) (download entry) (download Genome Reviews).
• Plasmid lp28-1 EMBL accession number AE000794 (linear; 26,921 bp) (download entry) (download Genome Reviews).
• Plasmid lp28-2 EMBL accession number AE000786 (linear; 29,766 bp) (download entry) (download Genome Reviews).
• Plasmid lp28-3 EMBL accession number AE000784 (linear; 28,601 bp) (download entry) (download Genome Reviews).
• Plasmid lp28-4 EMBL accession number AE000789 (linear; 27,323 bp) (download entry) (download Genome Reviews).
• Plasmid lp38 EMBL accession number AE000787 (linear; 38,829 bp) (download entry) (download Genome Reviews).
• Plasmid lp36 EMBL accession number AE000788 (linear; 36,849 bp) (download entry) (download Genome Reviews).
• Plasmid lp5 EMBL accession number AE001583 (linear; 5,228 bp) (download entry) (download Genome Reviews).
• Plasmid lp21 EMBL accession number AE001582 (linear; 18,753 bp) (download entry) (download Genome Reviews).
• Plasmid lp56 EMBL accession number AE001584 (linear; 52,971 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-1 EMBL accession number AE001575 (circular; 30,750 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-3 EMBL accession number AE001576 (circular; 30,223 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-4 EMBL accession number AE001577 (circular; 30,299 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-6 EMBL accession number AE001578 (circular; 29,838 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-7 EMBL accession number AE001579 (circular; 30,800 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-8 EMBL accession number AE001580 (circular; 30,885 bp) (download entry) (download Genome Reviews).
• Plasmid cp32-9 EMBL accession number AE001581 (circular; 30,651 bp) (download entry) (download Genome Reviews).
References
[1] MEDLINE=98065943; PubMed=9403685; [ NCBI , EBI , Israel , Japan ]
Fraser C.M., Casjens S., Huang W.M., Sutton G.G., Clayton R.A., Lathigra R., White O., Ketchum K.A., Dodson R.J., Hickey E.K., Gwinn M.L., Dougherty B.A., Tomb J.-F., Fleischmann R.D., Richardson D.L., Peterson J.D., Kerlavage A.R., Quackenbush J., Salzberg S.L., Hanson M., van Vugt R., Palmer N., Adams M.D., Gocayne J.D., Weidman J.F., Utterback T.R., Watthey L., McDonald L.A., Artiach P., Bowman C., Garland S.A., Fujii C., Cotton M.D., Horst K., Roberts K.M., Hatch B., Smith H.O., Venter J.C. ;
"Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi.";
Nature 390:580-586(1997).
[2] MEDLINE=20138354; PubMed=10672174; [ NCBI , EBI , Israel , Japan ]
Casjens S., Palmer N., van Vugt R., Huang W.M., Stevenson B., Rosa P., Lathigra R., Sutton G.G., Peterson J.D., Dodson R.J., Haft D.H., Hickey E.K., Gwinn M.L., White O., Fraser C.M. ;
"A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi.";
Mol. Microbiol. 35:490-516(2000).
Web links
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Borrelia&GLspecies=burgdorferi&GLstrain=B31
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid224326%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bbur_B31
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p3_Bor_burgd
TIGR CMR: http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?database=gbb
 EBI Proteome Analysis page



Tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
 Hosted by br flag LNCC Brazil Mirror sites: Australia  Canada  China  Korea  Switzerland
Search for