PROSITE links

ExPASy Home page

Site Map

Search ExPASy

Contact us

PROSITE

The ExPASy Server requires Javascript to be fully functional. You may not see all the information available for this page (More information).

Links

Links

This list contains links to some PROSITE related resources. These links as well as many more are also available from the ExPASy Life Science Directory and the ExPASy Proteomics Tools.

[Databases of protein domains and families][Pattern and profile searches]

Databases of protein domains and families
PROSITE - Database of protein families and domains BLOCKS - BLOCKS db Gene3D - Structural and Functional Annotation of Protein Families Panther - Functional classification system Pfam - Protein families db (HMM derived) [Mirrors at JFRC (USA), CCBB (South Korea) Institute, UK, Karolinska Institutet (Sweden)] PIRSF - Protein classification system PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL proteins SBASE - SBASE domain db SMART - Simple Modular Architecture Research Tool Superfamily - Library of profile HMMs representing all proteins of known structure STRING - Search Tool for the Retrieval of Interacting Genes/Proteins TIGRFAMs - TIGR protein families db

Databases of protein domains and families

PROSITE - Database of protein families and domains
BLOCKS - BLOCKS db
Gene3D - Structural and Functional Annotation of Protein Families
Panther - Functional classification system
Pfam - Protein families db (HMM derived) [Mirrors at JFRC (USA), CCBB (South Korea) Institute, UK, Karolinska Institutet (Sweden)]
PIRSF - Protein classification system
PRINTS - Protein Motif fingerprint db
ProDom - Protein domain db (Automatically generated)
PROTOMAP - An automatic hierarchical classification of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL proteins
SBASE - SBASE domain db
SMART - Simple Modular Architecture Research Tool
Superfamily - Library of profile HMMs representing all proteins of known structure
STRING - Search Tool for the Retrieval of Interacting Genes/Proteins
TIGRFAMs - TIGR protein families db

Pattern and profile searches
InterPro Scan - Integrated search in PROSITE, Pfam, PRINTS and other family and domain databases Hits - Relationships between protein sequences and motifs ScanProsite - Scans a sequence against PROSITE or a pattern against the UniProt Knowledgebase (Swiss-Prot and TrEMBL) HamapScan - Scans a sequence against the HAMAP families MotifScan - Scans a sequence against protein profile databases (including PROSITE) Pfam HMM search; scans a sequence against the Pfam protein families db [At Washington University or at Sanger Centre] - Detection of bipartite nuclear localization sequences--> FingerPRINTScan - Scans a protein sequence against the PRINTS Protein Fingerprint Database 3of5 - Complex Pattern Search - Regular expression searches in protein databases. This link is dead sinc at least end of April 2006, no answer from technical support --> ELM - Eukaryotic Linear Motif resource for functional sites in proteins PRATT - Interactively generates conserved patterns from a series of unaligned proteins; [at EBI / ExPASy ] PPSEARCH - Scans a sequence against PROSITE (allows a graphical output); at EBI PROSITE scan - Scans a sequence against PROSITE (allows mismatches); at PBIL PATTINPROT - Scans a protein sequence or a protein database for one or several pattern(s); at PBIL SMART - Simple Modular Architecture Research Tool; at EMBL TEIRESIAS - Generate patterns from a collection of unaligned protein or DNA sequences; at IBM 9aaTAD - Prediction of Nine Amino Acid Transactivation Domain

Pattern and profile searches

InterPro Scan - Integrated search in PROSITE, Pfam, PRINTS and other family and domain databases
Hits - Relationships between protein sequences and motifs
ScanProsite - Scans a sequence against PROSITE or a pattern against the UniProt Knowledgebase (Swiss-Prot and TrEMBL)
HamapScan - Scans a sequence against the HAMAP families
MotifScan - Scans a sequence against protein profile databases (including PROSITE)
Pfam HMM search; scans a sequence against the Pfam protein families db [At Washington University or at Sanger Centre] - Detection of bipartite nuclear localization sequences-->
FingerPRINTScan - Scans a protein sequence against the PRINTS Protein Fingerprint Database
3of5 - Complex Pattern Search - Regular expression searches in protein databases. This link is dead sinc at least end of April 2006, no answer from technical support -->
ELM - Eukaryotic Linear Motif resource for functional sites in proteins
PRATT - Interactively generates conserved patterns from a series of unaligned proteins; [at EBI / ExPASy ]
PPSEARCH - Scans a sequence against PROSITE (allows a graphical output); at EBI
PROSITE scan - Scans a sequence against PROSITE (allows mismatches); at PBIL
PATTINPROT - Scans a protein sequence or a protein database for one or several pattern(s); at PBIL
SMART - Simple Modular Architecture Research Tool; at EMBL
TEIRESIAS - Generate patterns from a collection of unaligned protein or DNA sequences; at IBM
9aaTAD - Prediction of Nine Amino Acid Transactivation Domain

Last modified 22-Jul-2008

ExPASy Home page

Site Map

Search ExPASy

Contact us

PROSITE

Hosted by

Mirror sites:

The ExPASy Server requires Javascript to be fully functional. You may not see all the information available for this page (More information).